Education

2013          PhD in Physics, University of Nottingham, UK Supervisor: Juan Garrahan
2007          BSc in Physics with Chemistry, Keele University, 1st class Honors
2004          Abitur, Gymansium Puchheim, Puchheim, Germany (Biology and Physics)
2003          A-levels, Rye St Antony School, Oxford, UK (Biology, Physics, RE)


Professional Experience

2015 - now          Postdoctoral Research Associate, in the Michel Group
2014 - now          Project manager with imaginary.org
2012 - 2015         Researcher in the Computational Molecular Biology Group


Teaching

2015 - 2017          Chemistry 1A and 1B co-tutor, University of Edinburgh
2014 - 2017          PyEmma workshop lecturer, Freie Universität Berlin and King's College London
2014 - 2015          MSc course on "Computational Molecular Physics and Methods of molecular simulations"
2008 - 2011          Tutor for problem classes University of Nottingham


Skills

Computational:
MD Software (Gromacs, OpenMM, etc.), Python, JAVA, C, Matlab

Languages: 
German (mother tongue)
English (fluent, written and spoken)
French (proficient, written and spoken)
Hebrew (intermediate, written and spoken)
Spanish (basic, written and spoken)


Publications

  1. Combining enhanced sampling simulations and Markov state modelling to characterise the dynamics of the intrinsically disordered Aβ 1-42 peptide, A.S.J.S. Mey, J. Michel, C.E. MacPhee, M. Schor, in preparation
  2. Markov State Models (and NMR) reveal hidden conformations of Cyclophiling A in the μs to ms timescale, J. Juárez-Jiménez, A. Gupta, H. Ioannidis, A.S.J.S. Mey, J. Michel in preparation
  3. Allosteric effects in a catalytically impaired variant of Cyclophilin A are unrelated to millisecond time scale motions, P. Wapeesittipan, A.S.J.S. Mey, M. Walkinshaw, J. Michel, J. Am. Chem. Soc. (2017) submitted
  4. An open licensed Math-Art Showcase for non-formal education, B. Violet, A.S.J.S. Mey, A.D. Matt, J. Math. Arts, (2017), submitted
  5. Impact of domain knowledge on blinded predictions of binding energies by alchemical free energy calculations, A.S.J.S. Mey, J. Juárez-Jiménez, J. Michel, J. Comput. Aided Mol. Des., xxx (2017) DOI
  6. Blinded predictions of host-guest standard free energies of binding in the SAMPL5 challenge, S. Bosisio, A.S.J.S. Mey, J. Michel, J. Comput. Aided Mol. Des. 31, 61 (2017) DOI
  7. Analytical methods for structural ensembles and dynamics of intrinsically disordered proteins, M. Schor, A.S.J.S. Mey, C.E. MacPhee, Biophys. Rev, 8, 429 (2016) DOI
  8. Blinded predictions of distribution coefficients in the SAMPL5 challenge, S. Bosisio, A.S.J.S. Mey, J. Michel, J. Comput. Aided. Mol. Des. 30, 1101 (2016) DOI
  9. Blinded predictions of binding modes and energies of HSP90-α ligands for the 2015 D3R Grand Challenge, A.S.J.S. Mey*, J. Juárez-Jiménez*, A. Hennessy, J. Michel, Bioorg. Med. Chem. 24, 4890 (2016) DOI
  10. Elucidation of Non-Additive Effects in Protein-Ligand Binding Energies: Thrombin as a Case Study, G. Calibre, C.J. Woods, F. Powlesland, A.S.J.S Mey, A.J. Mulholland, J. Michel, J. Phys. Chem. B 120, 5340 (2016) DOI
  11. Shedding light on the dock-lock mechanism in amyloid fibril growth using Markov State Models, M. Schor, A.S.J.S. Mey, F. Noé, C.E. MacPhee, J. Phys. Chem. Lett. 6, 1076 (2015) DOI
  12. Dynamic Properties of Forcefields, F. Vitalini*, A.S.J.S. Mey*, F. Noé and B.G. Keller, J. Chem. Phys. 142, 084101 (2015) DOI
  13. Statistically optimal analysis of state-discretized trajectory data from multiple thermodynamic states, H. Wu, A.S.J.S. Mey, E. Rosta, F. Noé, J. Chem. Phys. 141, 214106 (2014) DOI
  14. xTRAM: Estimating equilibrium expectations from time-correlated simulation data at multiple thermodynamic states, A.S.J.S. Mey, H. Wu, and F. Noé, Phys. Rev. X 4, 041018 (2014) DOI
  15. Rare-event trajectory ensemble analysis reveals metastable dynamical phases in lattice proteins, A.S.J.S. Mey, P.L. Geissler and J.P. Garrahan, Phys. Rev. E 89, 032109 (2014) DOI
  16. Variational approach to molecular kinetics, F. Nüske, B.G. Keller, G. Pérez-Hernández, A.S.J.S. Mey, F. Noé, J. Chem. Theory Comput. 10, 1739 (2014) DOI
  17. EMMA - A software package for Markov model building and analysis, M. Senne, B. Trendelkamp-Schroer, A.S.J.S. Mey, C. Schütte, F. Noé, J. Chem. Theory Comput. 8, 2223 (2012) DOI
  18. Thermodynamics of trajectories of the one-dimensional Ising model, E.S. Loscar, A.S.J.S. Mey, J.P. Garrahan, J. Stat. Mech. 2011, P12011 (2011) DOI
*Both authors contributed equally
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